STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_5723Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; regulatory protein LuxR; KEGG: hha:Hhal_0437 fis family transcriptional regulator; Belongs to the sigma-70 factor family. ECF subfamily. (176 aa)    
Predicted Functional Partners:
Kfla_5724
Hypothetical protein; KEGG: scl:sce1020 putative nucleotide-binding protein.
       0.773
Kfla_3044
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bam:Bamb_5731 ECF subfamily RNA polymerase sigma-24 factor.
  
     0.640
Kfla_5369
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: dac:Daci_3002 ECF subfamily RNA polymerase sigma-24 factor.
  
     0.631
Kfla_5725
Hypothetical protein; KEGG: acp:A2cp1_2437 putative esterase.
       0.559
Kfla_1475
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: mno:Mnod_1217 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
     0.517
Kfla_4360
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: nha:Nham_2659 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.493
Kfla_5722
KEGG: scl:sce2254 hypothetical protein.
       0.480
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.