STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_6183KEGG: xau:Xaut_4070 hypothetical protein; Belongs to the UPF0336 family. (140 aa)    
Predicted Functional Partners:
Kfla_6182
PFAM: MaoC domain protein dehydratase; KEGG: reu:Reut_B4755 MaoC-like dehydratase.
 
 
 0.999
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
       0.852
Kfla_2569
Putative transcriptional regulator, PucR family; KEGG: mpt:Mpe_B0536 CdaR family transcriptional regulator.
  
     0.745
Kfla_2568
PFAM: biotin/lipoyl attachment domain-containing protein; Acyl transferase; KEGG: cti:RALTA_A2071 malonyl CoA-acyl carrier protein transacylase.
  
   
 0.734
Kfla_0413
PFAM: Catalase domain protein; KEGG: mpo:Mpop_3405 catalase; Belongs to the catalase family.
   
 0.641
Kfla_5477
TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: lip:LI0589 sec-independent protein secretion pathway components.
  
     0.561
Kfla_6180
KEGG: cak:Caul_1743 alkaline phosphatase.
       0.553
Kfla_6184
Hypothetical protein.
       0.547
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
   
 0.535
Kfla_3678
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: mxa:MXAN_6987 fatty oxidation complex, alpha subunit.
  
 0.521
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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