STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_6353PFAM: extracellular solute-binding protein family 1; KEGG: rhi:NGR_b17990 oligogalacturonate binding protein. (442 aa)    
Predicted Functional Partners:
Kfla_6355
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc04136 putative transport system permease ABC transporter protein.
 
   0.938
Kfla_6354
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3327 binding-protein-dependent transport systems inner membrane component.
 
   0.937
Kfla_6351
Hypothetical protein.
 
     0.907
Kfla_6352
PFAM: oxidoreductase domain protein; KEGG: pol:Bpro_4498 oxidoreductase-like.
 
     0.848
Kfla_2099
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3328 binding-protein-dependent transport systems inner membrane component.
 
   0.822
Kfla_3591
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ara:Arad_4624 sugar ABC transporter.
 
   0.822
Kfla_4628
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3328 binding-protein-dependent transport systems inner membrane component.
 
   0.822
Kfla_2100
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3327 binding-protein-dependent transport systems inner membrane component.
  
   0.820
Kfla_4627
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3327 binding-protein-dependent transport systems inner membrane component.
  
   0.817
Kfla_3590
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH00084 sugar ABC transporter, permease protein.
  
   0.816
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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