STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Elen_0195PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_6967 ABC transporter related. (263 aa)    
Predicted Functional Partners:
Elen_0196
PFAM: ABC-2 type transporter; KEGG: sus:Acid_6966 ABC-2 type transporter.
 
  
 0.965
Elen_1221
KEGG: dde:Dde_1182 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
     
0.900
Elen_0194
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: bpl:BURPS1106A_2249 MerR family transcriptional regulator.
 
     0.883
Elen_0083
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU33830 glycine betaine/carnitine/choline ABC transporter ATP-binding protein.
 
    
0.664
Elen_0232
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: maq:Maqu_2293 ABC transporter related.
 
     
0.637
Elen_0701
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: gur:Gura_1554 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
  
     0.574
Elen_2588
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbt:BBta_7063 putative ABC transporter, ATP- binding protein.
   
0.543
Elen_1457
KEGG: acp:A2cp1_1561 hypothetical protein.
  
 
 0.540
Elen_2276
Hypothetical protein; KEGG: bcy:Bcer98_3920 bacitracin transport permease protein BCRB.
  
 
 0.540
Elen_2293
KEGG: afw:Anae109_0249 hypothetical protein.
  
 
 0.540
Your Current Organism:
Eggerthella lenta
NCBI taxonomy Id: 479437
Other names: E. lenta DSM 2243, Eggerthella lenta DSM 2243, Eggerthella lenta str. DSM 2243, Eggerthella lenta strain DSM 2243
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