STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Elen_0238TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_5538 polar amino acid ABC transporter, inner membrane subunit. (450 aa)    
Predicted Functional Partners:
Elen_0237
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: smd:Smed_2979 extracellular solute-binding protein family 3.
 0.999
Elen_0239
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO_1042 amino acid ABC transporter, ATP- binding protein.
 
 0.987
Elen_0663
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dac:Daci_5537 ABC transporter related.
 
 0.950
Elen_1133
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2308 ATPase.
 
 0.946
Elen_0661
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: ajs:Ajs_0743 extracellular solute-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.934
Elen_1134
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: cff:CFF8240_1164 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein.
 
 
 0.885
Elen_1212
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bph:Bphy_7227 extracellular solute-binding protein.
 
 
 0.626
Elen_0662
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2970 amino acid ABC transporter permease.
 
  
 
0.564
Elen_1135
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hhe:HH1482 putative ABC-type amino-acid transporter permease protein.
 
  
 
0.545
Elen_1136
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cjd:JJD26997_0895 amino acid ABC transporter, permease protein PEB1.
 
  
 
0.511
Your Current Organism:
Eggerthella lenta
NCBI taxonomy Id: 479437
Other names: E. lenta DSM 2243, Eggerthella lenta DSM 2243, Eggerthella lenta str. DSM 2243, Eggerthella lenta strain DSM 2243
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