STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Elen_0555PFAM: type II secretion system protein; KEGG: bbr:BB2099 hypothetical protein. (306 aa)    
Predicted Functional Partners:
Elen_0554
PFAM: type II secretion system protein E; KEGG: eba:ebA3705 secretion ATPase protein, type II secretion system protein E.
 
  
 0.963
Elen_0556
PFAM: type II secretion system protein; KEGG: type II secretion system protein.
 
     0.948
Elen_0553
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: cak:Caul_4194 Flp pilus assembly protein CpaB.
 
  
 0.921
Elen_0537
PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: bpt:Bpet2078 putative general secretion pathway ATPase.
 
  
 0.896
Elen_0880
PFAM: type II secretion system protein; KEGG: dvl:Dvul_1107 type II secretion system protein.
 
  
 0.896
Elen_1757
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: pca:Pcar_1746 Flp pilus assembly protein CpaB.
 
  
 0.877
Elen_1756
PFAM: type II secretion system protein E; KEGG: dde:Dde_2363 type II/IV secretion system protein.
 
  
 0.866
Elen_0882
PFAM: type II secretion system protein E; KEGG: hne:HNE_1153 type II/IV secretion system protein.
 
  
 0.865
Elen_0535
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: vsp:VS_2444 Flp pilus assembly protein CpaB.
 
  
 0.855
Elen_0536
KEGG: ade:Adeh_2826 Flp pilus assembly protein ATPase CpaE-like.
 
  
 0.847
Your Current Organism:
Eggerthella lenta
NCBI taxonomy Id: 479437
Other names: E. lenta DSM 2243, Eggerthella lenta DSM 2243, Eggerthella lenta str. DSM 2243, Eggerthella lenta strain DSM 2243
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