STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Elen_0912Hypothetical protein; KEGG: chromodomain helicase DNA binding protein; K11367 chromodomain-helicase-DNA-binding protein 1. (296 aa)    
Predicted Functional Partners:
Elen_0910
Plasmid maintenance system antidote protein, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: plu:plu3590 hypothetical protein.
       0.762
Elen_0911
KEGG: sus:Acid_7732 DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein.
       0.762
Elen_0913
KEGG: scl:sce5238 hypothetical protein.
       0.693
Elen_0914
Type IV secretory pathway VirB4 protein-like protein; KEGG: bca:BCE_A0025 hypothetical protein.
       0.674
Elen_0909
PFAM: Cna B domain protein; KEGG: bce:BC0887 collagen adhesion protein.
       0.473
Elen_0915
Hypothetical protein.
       0.440
Elen_0916
Hypothetical protein.
       0.440
Elen_0917
Hypothetical protein.
       0.412
Your Current Organism:
Eggerthella lenta
NCBI taxonomy Id: 479437
Other names: E. lenta DSM 2243, Eggerthella lenta DSM 2243, Eggerthella lenta str. DSM 2243, Eggerthella lenta strain DSM 2243
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.