STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Elen_0997PFAM: cobalt transport protein; KEGG: bsu:BSU01470 hypothetical protein. (264 aa)    
Predicted Functional Partners:
Elen_0998
ABC transporter related; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 0.999
ecfA
ABC transporter related; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 0.999
Elen_2889
PFAM: BioY protein; KEGG: dde:Dde_2954 BioY family protein.
 
 0.943
Elen_1000
Conserved hypothetical protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.
 
   
 0.905
Elen_0996
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: sew:SeSA_B0050 NimC/NimA family protein.
       0.697
Elen_1029
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcb:BCB4264_A3317 ABC transporter, ATP- binding protein.
 
 
 0.680
Elen_2487
KEGG: bsu:BSU10010 hypothetical protein.
 
 
 0.677
Elen_1434
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hha:Hhal_0379 ABC transporter related.
 
 
 0.666
Elen_0324
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hha:Hhal_0379 ABC transporter related.
 
 
 0.663
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
  
 0.659
Your Current Organism:
Eggerthella lenta
NCBI taxonomy Id: 479437
Other names: E. lenta DSM 2243, Eggerthella lenta DSM 2243, Eggerthella lenta str. DSM 2243, Eggerthella lenta strain DSM 2243
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