STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Elen_1256PFAM: nickel-dependent hydrogenase large subunit; KEGG: sat:SYN_02222 nickel-dependent hydrogenase. (430 aa)    
Predicted Functional Partners:
Elen_1255
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: sat:SYN_02221 nickel-dependent hydrogenase, small chain.
 
 0.999
Elen_1254
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sat:SYN_02220 oxidoreductase.
 
   
 0.950
Elen_1253
KEGG: mgm:Mmc1_0881 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
     0.945
Elen_0442
PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: glo:Glov_1164 formate dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.903
Elen_0447
PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: glo:Glov_1164 formate dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.903
Elen_2753
PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: mgm:Mmc1_1580 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.903
Elen_2919
PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: dde:Dde_0682 hypothetical protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.903
Elen_2286
TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: gur:Gura_3859 cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.
     
  0.900
Elen_0140
TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; KEGG: dvm:DvMF_2355 (NiFe) hydrogenase maturation protein HypF; Belongs to the acylphosphatase family.
 
   
 0.784
Elen_0142
TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: sfu:Sfum_4014 hydrogenase expression/formation protein HypD.
 
   
 0.759
Your Current Organism:
Eggerthella lenta
NCBI taxonomy Id: 479437
Other names: E. lenta DSM 2243, Eggerthella lenta DSM 2243, Eggerthella lenta str. DSM 2243, Eggerthella lenta strain DSM 2243
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.