Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplM | rplU | Elen_0346 | Elen_2013 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.983 |
| rplM | rpmA | Elen_0346 | Elen_2012 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: smt:Smal_1120 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.989 |
| rplM | rpmB | Elen_0346 | Elen_1351 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: dal:Dalk_2403 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.978 |
| rplM | rpmE | Elen_0346 | Elen_1117 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L31; Binds the 23S rRNA. | 0.979 |
| rplM | rpmF | Elen_0346 | Elen_1364 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: gur:Gura_1873 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.972 |
| rplM | rpsF | Elen_0346 | Elen_0022 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.986 |
| rplM | rpsI | Elen_0346 | Elen_0347 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | PFAM: ribosomal protein S9; KEGG: bcu:BCAH820_0157 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
| rplM | rpsO | Elen_0346 | Elen_1629 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.992 |
| rplM | rpsP | Elen_0346 | Elen_1378 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: dal:Dalk_4649 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.985 |
| rplM | rpsT | Elen_0346 | Elen_1654 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.981 |
| rplU | rplM | Elen_2013 | Elen_0346 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.983 |
| rplU | rpmA | Elen_2013 | Elen_2012 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: smt:Smal_1120 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.999 |
| rplU | rpmB | Elen_2013 | Elen_1351 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: dal:Dalk_2403 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.981 |
| rplU | rpmE | Elen_2013 | Elen_1117 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | Ribosomal protein L31; Binds the 23S rRNA. | 0.981 |
| rplU | rpmF | Elen_2013 | Elen_1364 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: gur:Gura_1873 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.977 |
| rplU | rpsF | Elen_2013 | Elen_0022 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.985 |
| rplU | rpsI | Elen_2013 | Elen_0347 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | PFAM: ribosomal protein S9; KEGG: bcu:BCAH820_0157 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.983 |
| rplU | rpsO | Elen_2013 | Elen_1629 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.974 |
| rplU | rpsP | Elen_2013 | Elen_1378 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: dal:Dalk_4649 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.983 |
| rplU | rpsT | Elen_2013 | Elen_1654 | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.984 |
page 1 of 6