STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Elen_1759PFAM: TadE family protein. (170 aa)    
Predicted Functional Partners:
Elen_1758
Hypothetical protein.
       0.773
Elen_1760
Hypothetical protein.
       0.773
Elen_1756
PFAM: type II secretion system protein E; KEGG: dde:Dde_2363 type II/IV secretion system protein.
       0.596
Elen_1757
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: pca:Pcar_1746 Flp pilus assembly protein CpaB.
       0.596
Elen_1755
PFAM: type II secretion system protein; KEGG: bpy:Bphyt_4618 type II secretion system protein.
       0.573
Elen_1761
Hypothetical protein.
       0.572
Elen_1754
PFAM: type II secretion system protein; KEGG: ppd:Ppro_2698 type II secretion system protein.
       0.565
Elen_1762
PFAM: peptidase A24A prepilin type IV; KEGG: gur:Gura_1800 peptidase A24A domain- containing protein.
       0.462
Elen_1763
Hypothetical protein.
       0.462
Your Current Organism:
Eggerthella lenta
NCBI taxonomy Id: 479437
Other names: E. lenta DSM 2243, Eggerthella lenta DSM 2243, Eggerthella lenta str. DSM 2243, Eggerthella lenta strain DSM 2243
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.