STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Elen_1909Putative transcriptional regulator, XRE family; KEGG: bca:BCE_0370 hypothetical protein. (73 aa)    
Predicted Functional Partners:
Elen_1910
Hypothetical protein.
       0.526
Elen_0870
PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; KEGG: ajs:Ajs_1578 helicase domain-containing protein.
 
     0.504
Elen_0918
PFAM: TRAG family protein; KEGG: dps:DPPA13 related to plasmid transfer complex protein TrsK/TraK.
 
     0.421
Elen_0788
PFAM: TRAG family protein; KEGG: dps:DPPA13 related to plasmid transfer complex protein TrsK/TraK.
 
     0.417
Elen_1502
PFAM: TRAG family protein; KEGG: mes:Meso_4169 TraG protein.
 
     0.405
Your Current Organism:
Eggerthella lenta
NCBI taxonomy Id: 479437
Other names: E. lenta DSM 2243, Eggerthella lenta DSM 2243, Eggerthella lenta str. DSM 2243, Eggerthella lenta strain DSM 2243
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.