STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Elen_2059PFAM: beta-lactamase domain protein; KEGG: dol:Dole_2556 beta-lactamase domain- containing protein. (350 aa)    
Predicted Functional Partners:
Elen_2060
PFAM: Amidohydrolase 3; amidohydrolase; KEGG: aba:Acid345_3443 amidohydrolase 3.
       0.672
Elen_3102
PFAM: MaoC domain protein dehydratase; KEGG: vei:Veis_0232 MaoC domain protein dehydratase.
 
    0.542
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
 
   0.460
Elen_1854
PFAM: beta-lactamase domain protein; KEGG: pzu:PHZ_c2735 metallo-beta-lactamase family protein.
  
   
 0.449
Elen_3103
PFAM: MaoC domain protein dehydratase; KEGG: reu:Reut_A1834 MaoC-like dehydratase.
 
    0.446
Elen_0207
PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: vok:COSY_0905 rhodanese family protein.
  
 
 0.437
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
 
 0.408
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
 
 0.400
Your Current Organism:
Eggerthella lenta
NCBI taxonomy Id: 479437
Other names: E. lenta DSM 2243, Eggerthella lenta DSM 2243, Eggerthella lenta str. DSM 2243, Eggerthella lenta strain DSM 2243
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.