STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Elen_2268TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mxa:MXAN_0895 phytoene desaturase. (497 aa)    
Predicted Functional Partners:
Elen_2267
PFAM: Squalene/phytoene synthase; KEGG: Os09g0555500; hypothetical protein; K02291 phytoene synthase.
 
 0.999
Elen_2266
PFAM: protein of unknown function DUF92 transmembrane; phosphatidate cytidylyltransferase; KEGG: bha:BH1418 hypothetical protein.
 
     0.875
Elen_0577
PFAM: Polyprenyl synthetase; KEGG: Polyprenyl synthetase family protein; Belongs to the FPP/GGPP synthase family.
  
  
 0.672
Elen_2269
TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: transcriptional regulator, BadM/Rrf2 family.
       0.513
Elen_0280
PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: gme:Gmet_1629 homoserine dehydrogenase.
      
 0.447
Elen_2231
KEGG: hypothetical LOC582363.
 
   
 0.418
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
     
 0.408
Elen_2265
KEGG: hypothetical protein.
  
    0.408
Your Current Organism:
Eggerthella lenta
NCBI taxonomy Id: 479437
Other names: E. lenta DSM 2243, Eggerthella lenta DSM 2243, Eggerthella lenta str. DSM 2243, Eggerthella lenta strain DSM 2243
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