STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Elen_3087PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hha:Hhal_0379 ABC transporter related. (498 aa)    
Predicted Functional Partners:
Elen_3088
PFAM: cobalt transport protein; KEGG: vpa:VPA1483 putative ABC transporter membrane- spanning permease.
 
 
 0.970
Elen_3089
TIGRFAM: conserved hypothetical protein.
 
     0.881
Elen_0335
PFAM: cobalt transport protein; KEGG: hha:Hhal_0380 cobalt transport protein.
 
 
 0.874
Elen_2306
PFAM: cobalt transport protein; KEGG: hha:Hhal_0380 cobalt transport protein.
 
 
 0.872
Elen_0310
Hypothetical protein; KEGG: hha:Hhal_0380 cobalt transport protein.
 
 
 0.870
Elen_1433
PFAM: cobalt transport protein; KEGG: vha:VIBHAR_05107 ABC-type cobalt transport system permease component CbiQ.
 
 0.870
Elen_0323
PFAM: cobalt transport protein; KEGG: hha:Hhal_0380 cobalt transport protein.
 
 
 0.869
Elen_2319
PFAM: cobalt transport protein; KEGG: hha:Hhal_0380 cobalt transport protein.
 
 
 0.867
Elen_0314
PFAM: cobalt transport protein; KEGG: hha:Hhal_0380 cobalt transport protein.
 
 
 0.866
Elen_1483
PFAM: cobalt transport protein; KEGG: hha:Hhal_0380 cobalt transport protein.
 
 
 0.866
Your Current Organism:
Eggerthella lenta
NCBI taxonomy Id: 479437
Other names: E. lenta DSM 2243, Eggerthella lenta DSM 2243, Eggerthella lenta str. DSM 2243, Eggerthella lenta strain DSM 2243
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