STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHMEG_00040972RNA_GG_bind domain-containing protein. (181 aa)    
Predicted Functional Partners:
PHMEG_00031366
Nuclear cap-binding protein subunit 2.
   
 0.959
PHMEG_0001375
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
    
  0.906
PHMEG_00029676
Suppressor of necrosis 1.
   
 0.756
PHMEG_00017875
C2H2-type domain-containing protein.
   
 0.756
PHMEG_0005556
CID domain-containing protein.
   
 0.677
PHMEG_00039309
RNA polymerase II subunit A C-terminal domain phosphatase.
   
 
  0.569
PHMEG_00011877
RNA polymerase II subunit A Cterminal domain phosphatase.
   
 
  0.569
PHMEG_00029602
HECT domain-containing protein.
    
   0.502
PHMEG_00024711
HECT E3 ubiquitin ligase.
    
   0.502
PHMEG_00023144
HECT E3 ubiquitin ligase.
    
   0.502
Your Current Organism:
Phytophthora megakarya
NCBI taxonomy Id: 4795
Other names: ATCC 42100, CBS 238.83, IMI 202077, P. megakarya
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