PHMEG_00037080 protein (Phytophthora megakarya)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PHMEG_00037080

Heat shock protein 70. (269 aa)

Predicted Functional Partners:

PHMEG_00025643

0.913

PHMEG_00028839

0.905

PHMEG_00010222

0.900

PHMEG_00026997

0.896

PHMEG_00022174

0.895

PHMEG_000109

0.878

PHMEG_000329

0.868

PHMEG_0003191

0.854

PHMEG_00012242

0.817

PHMEG_00011718

0.817

Your Current Organism:

Phytophthora megakarya

NCBI taxonomy Id: 4795
Other names: ATCC 42100, CBS 238.83, IMI 202077, P. megakarya

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHMEG_00010222	PHMEG_000109	A0A225WE87	A0A225X3T4	Chaperone DnaJ.	Heat shock protein 90.	0.867
PHMEG_00010222	PHMEG_00025643	A0A225WE87	A0A225VBK7	Chaperone DnaJ.	Heat shock protein 90.	0.890
PHMEG_00010222	PHMEG_0003191	A0A225WE87	A0A225WYK9	Chaperone DnaJ.	Heat shock protein70.	0.934
PHMEG_00010222	PHMEG_000329	A0A225WE87	A0A225X5R6	Chaperone DnaJ.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.744
PHMEG_00010222	PHMEG_00037080	A0A225WE87	A0A225ULT7	Chaperone DnaJ.	Heat shock protein 70.	0.900
PHMEG_000109	PHMEG_00010222	A0A225X3T4	A0A225WE87	Heat shock protein 90.	Chaperone DnaJ.	0.867
PHMEG_000109	PHMEG_00011718	A0A225X3T4	A0A225WCA4	Heat shock protein 90.	Uncharacterized protein.	0.867
PHMEG_000109	PHMEG_00012242	A0A225X3T4	A0A225WAX8	Heat shock protein 90.	Uncharacterized protein.	0.867
PHMEG_000109	PHMEG_00022174	A0A225X3T4	A0A225VLP9	Heat shock protein 90.	Chaperone DnaJ.	0.867
PHMEG_000109	PHMEG_00025643	A0A225X3T4	A0A225VBK7	Heat shock protein 90.	Heat shock protein 90.	0.780
PHMEG_000109	PHMEG_00026997	A0A225X3T4	A0A225V7X9	Heat shock protein 90.	Uncharacterized protein.	0.867
PHMEG_000109	PHMEG_00028839	A0A225X3T4	A0A225V412	Heat shock protein 90.	Uncharacterized protein.	0.867
PHMEG_000109	PHMEG_0003191	A0A225X3T4	A0A225WYK9	Heat shock protein 90.	Heat shock protein70.	0.973
PHMEG_000109	PHMEG_000329	A0A225X3T4	A0A225X5R6	Heat shock protein 90.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.783
PHMEG_000109	PHMEG_00037080	A0A225X3T4	A0A225ULT7	Heat shock protein 90.	Heat shock protein 70.	0.878
PHMEG_00011718	PHMEG_000109	A0A225WCA4	A0A225X3T4	Uncharacterized protein.	Heat shock protein 90.	0.867
PHMEG_00011718	PHMEG_00025643	A0A225WCA4	A0A225VBK7	Uncharacterized protein.	Heat shock protein 90.	0.890
PHMEG_00011718	PHMEG_0003191	A0A225WCA4	A0A225WYK9	Uncharacterized protein.	Heat shock protein70.	0.891
PHMEG_00011718	PHMEG_000329	A0A225WCA4	A0A225X5R6	Uncharacterized protein.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.744
PHMEG_00011718	PHMEG_00037080	A0A225WCA4	A0A225ULT7	Uncharacterized protein.	Heat shock protein 70.	0.817