STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHMEG_00035005Polyprotein. (299 aa)    
Predicted Functional Partners:
PHMEG_0007847
DEAD/DEAH box RNA helicase.
    
  0.656
PHMEG_00036071
Integrase catalytic domain-containing protein.
  
     0.509
PHMEG_00034168
Pol Polyprotein.
  
     0.479
PHMEG_00034979
Integrase, catalytic core protein.
 
     0.478
PHMEG_0009016
Integrase catalytic domain-containing protein.
  
     0.475
PHMEG_0002495
CCHC-type domain-containing protein.
  
     0.469
PHMEG_00010627
Integrase, catalytic core protein.
  
     0.428
PHMEG_0008037
Integrase catalytic domain-containing protein.
  
     0.426
PHMEG_0005139
Integrase catalytic domain-containing protein.
  
     0.422
PHMEG_000544
Integrase, catalytic core protein.
  
     0.421
Your Current Organism:
Phytophthora megakarya
NCBI taxonomy Id: 4795
Other names: ATCC 42100, CBS 238.83, IMI 202077, P. megakarya
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.