PHMEG_00035678 protein (Phytophthora megakarya)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PHMEG_00035678

RNase H domain-containing protein. (265 aa)

Predicted Functional Partners:

PHMEG_0007847

0.656

PHMEG_00036954

0.541

PHMEG_00041112

0.512

PHMEG_00019752

0.510

PHMEG_00037760

0.486

PHMEG_00039677

0.477

PHMEG_00041225

0.473

PHMEG_00034876

0.468

PHMEG_00021291

0.468

PHMEG_00029757

0.461

Your Current Organism:

Phytophthora megakarya

NCBI taxonomy Id: 4795
Other names: ATCC 42100, CBS 238.83, IMI 202077, P. megakarya

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHMEG_00019752	PHMEG_00035678	A0A225VRP6	A0A225UPR1	Reverse transcriptase.	RNase H domain-containing protein.	0.510
PHMEG_00019752	PHMEG_00036954	A0A225VRP6	A0A225UKD6	Reverse transcriptase.	Reverse transcriptase.	0.523
PHMEG_00021291	PHMEG_00035678	A0A225VNW7	A0A225UPR1	RNase H domain-containing protein.	RNase H domain-containing protein.	0.468
PHMEG_00021291	PHMEG_00036954	A0A225VNW7	A0A225UKD6	RNase H domain-containing protein.	Reverse transcriptase.	0.489
PHMEG_00029757	PHMEG_00035678	A0A225V2S5	A0A225UPR1	RNase H domain-containing protein.	RNase H domain-containing protein.	0.461
PHMEG_00034876	PHMEG_00035678	A0A225URJ1	A0A225UPR1	RNase H domain-containing protein.	RNase H domain-containing protein.	0.468
PHMEG_00035678	PHMEG_00019752	A0A225UPR1	A0A225VRP6	RNase H domain-containing protein.	Reverse transcriptase.	0.510
PHMEG_00035678	PHMEG_00021291	A0A225UPR1	A0A225VNW7	RNase H domain-containing protein.	RNase H domain-containing protein.	0.468
PHMEG_00035678	PHMEG_00029757	A0A225UPR1	A0A225V2S5	RNase H domain-containing protein.	RNase H domain-containing protein.	0.461
PHMEG_00035678	PHMEG_00034876	A0A225UPR1	A0A225URJ1	RNase H domain-containing protein.	RNase H domain-containing protein.	0.468
PHMEG_00035678	PHMEG_00036954	A0A225UPR1	A0A225UKD6	RNase H domain-containing protein.	Reverse transcriptase.	0.541
PHMEG_00035678	PHMEG_00037760	A0A225UPR1	A0A225UJ35	RNase H domain-containing protein.	Reverse transcriptase.	0.486
PHMEG_00035678	PHMEG_00039677	A0A225UPR1	A0A225UF07	RNase H domain-containing protein.	Reverse transcriptase.	0.477
PHMEG_00035678	PHMEG_00041112	A0A225UPR1	A0A225UC99	RNase H domain-containing protein.	RNase H domain-containing protein.	0.512
PHMEG_00035678	PHMEG_00041225	A0A225UPR1	A0A225UC56	RNase H domain-containing protein.	RNase H domain-containing protein.	0.473
PHMEG_00035678	PHMEG_0007847	A0A225UPR1	A0A225WMJ0	RNase H domain-containing protein.	DEAD/DEAH box RNA helicase.	0.656
PHMEG_00036954	PHMEG_00019752	A0A225UKD6	A0A225VRP6	Reverse transcriptase.	Reverse transcriptase.	0.523
PHMEG_00036954	PHMEG_00021291	A0A225UKD6	A0A225VNW7	Reverse transcriptase.	RNase H domain-containing protein.	0.489
PHMEG_00036954	PHMEG_00035678	A0A225UKD6	A0A225UPR1	Reverse transcriptase.	RNase H domain-containing protein.	0.541
PHMEG_00037760	PHMEG_00035678	A0A225UJ35	A0A225UPR1	Reverse transcriptase.	RNase H domain-containing protein.	0.486