STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHMEG_00034888Retrotransposon protein, Ty1-Copia subclass. (172 aa)    
Predicted Functional Partners:
PHMEG_0007847
DEAD/DEAH box RNA helicase.
    
  0.656
PHMEG_00031788
Polyprotein.
  
     0.524
PHMEG_00036990
Copia type Polyprotein.
  
     0.517
PHMEG_00022087
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.497
PHMEG_00016724
Putative mitochondrial protein.
  
     0.492
PHMEG_0006656
Integrase, catalytic core protein.
  
     0.486
PHMEG_00035858
Reverse transcriptase.
  
     0.478
PHMEG_0008606
Integrase, catalytic core protein.
  
     0.477
PHMEG_00026916
Reverse transcriptase.
  
     0.476
PHMEG_00024350
Integrase, catalytic core protein.
  
     0.476
Your Current Organism:
Phytophthora megakarya
NCBI taxonomy Id: 4795
Other names: ATCC 42100, CBS 238.83, IMI 202077, P. megakarya
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.