PHMEG_00030704 protein (Phytophthora megakarya)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PHMEG_00030704

Nudix hydrolase domain-containing protein. (358 aa)

Predicted Functional Partners:

PHMEG_0001804

0.884

PHMEG_0006289

0.855

PHMEG_00029565

0.844

PHMEG_00026577

0.801

PHMEG_00037091

0.781

PHMEG_0007051

0.781

PHMEG_0001551

0.701

LSM4

0.684

LSM3

0.665

PHMEG_00028139

0.657

Your Current Organism:

Phytophthora megakarya

NCBI taxonomy Id: 4795
Other names: ATCC 42100, CBS 238.83, IMI 202077, P. megakarya

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	LSM4	A0A225WWG5	A0A225VK22	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
LSM3	PHMEG_0001804	A0A225WWG5	A0A225X1W1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	YjeF N-terminal domain-containing protein.	0.823
LSM3	PHMEG_00026577	A0A225WWG5	A0A225V9A3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Enhancer of mRNA-decapping protein.	0.690
LSM3	PHMEG_00028139	A0A225WWG5	A0A225V5M3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	PHMEG_00029565	A0A225WWG5	A0A225V264	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.996
LSM3	PHMEG_00030704	A0A225WWG5	A0A225V191	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Nudix hydrolase domain-containing protein.	0.665
LSM3	PHMEG_00037091	A0A225WWG5	A0A225UJV6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	5'-3' exoribonuclease 1.	0.871
LSM3	PHMEG_0006289	A0A225WWG5	A0A225WPJ9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	mRNA_decap_C domain-containing protein.	0.786
LSM3	PHMEG_0007051	A0A225WWG5	A0A225WMS6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	5'-3' exoribonuclease 1.	0.871
LSM4	LSM3	A0A225VK22	A0A225WWG5	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
LSM4	PHMEG_0001804	A0A225VK22	A0A225X1W1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	YjeF N-terminal domain-containing protein.	0.869
LSM4	PHMEG_00026577	A0A225VK22	A0A225V9A3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Enhancer of mRNA-decapping protein.	0.743
LSM4	PHMEG_00028139	A0A225VK22	A0A225V5M3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
LSM4	PHMEG_00029565	A0A225VK22	A0A225V264	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.995
LSM4	PHMEG_00030704	A0A225VK22	A0A225V191	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Nudix hydrolase domain-containing protein.	0.684
LSM4	PHMEG_00037091	A0A225VK22	A0A225UJV6	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	5'-3' exoribonuclease 1.	0.767
LSM4	PHMEG_0006289	A0A225VK22	A0A225WPJ9	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	mRNA_decap_C domain-containing protein.	0.895
LSM4	PHMEG_0007051	A0A225VK22	A0A225WMS6	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	5'-3' exoribonuclease 1.	0.767
PHMEG_0001551	PHMEG_00030704	A0A225X2U3	A0A225V191	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.701
PHMEG_0001804	LSM3	A0A225X1W1	A0A225WWG5	YjeF N-terminal domain-containing protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.823