PHMEG_00028251 protein (Phytophthora megakarya)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PHMEG_00028251

Rab proteins geranylgeranyltransferase component A. (574 aa)

Predicted Functional Partners:

PHMEG_0005959

0.924

PHMEG_00038752

0.906

PHMEG_00035294

0.906

PHMEG_0007065

0.906

PHMEG_0005948

0.829

PHMEG_0001637

0.829

PHMEG_00041778

0.806

PHMEG_00024960

0.806

PHMEG_00021443

0.806

PHMEG_00020106

0.806

Your Current Organism:

Phytophthora megakarya

NCBI taxonomy Id: 4795
Other names: ATCC 42100, CBS 238.83, IMI 202077, P. megakarya

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHMEG_0001637	PHMEG_00020106	A0A225X2N3	A0A225VR45	Rab5 family GTPase.	Rab28 family GTPase.	0.642
PHMEG_0001637	PHMEG_00021443	A0A225X2N3	A0A225VMH9	Rab5 family GTPase.	Ras family GTPase.	0.682
PHMEG_0001637	PHMEG_00024960	A0A225X2N3	A0A225VFQ3	Rab5 family GTPase.	Uncharacterized protein.	0.642
PHMEG_0001637	PHMEG_00028251	A0A225X2N3	A0A225V5C1	Rab5 family GTPase.	Rab proteins geranylgeranyltransferase component A.	0.829
PHMEG_0001637	PHMEG_00035294	A0A225X2N3	A0A225UPH3	Rab5 family GTPase.	Uncharacterized protein.	0.784
PHMEG_0001637	PHMEG_00038752	A0A225X2N3	A0A225UGY9	Rab5 family GTPase.	Uncharacterized protein.	0.784
PHMEG_0001637	PHMEG_00041778	A0A225X2N3	A0A225UAY0	Rab5 family GTPase.	Rab28 family GTPase.	0.694
PHMEG_0001637	PHMEG_0005959	A0A225X2N3	A0A225WQA2	Rab5 family GTPase.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.696
PHMEG_0001637	PHMEG_0007065	A0A225X2N3	A0A225WMF4	Rab5 family GTPase.	Geranylgeranyl transferase type-2 subunit alpha.	0.784
PHMEG_00020106	PHMEG_0001637	A0A225VR45	A0A225X2N3	Rab28 family GTPase.	Rab5 family GTPase.	0.642
PHMEG_00020106	PHMEG_00028251	A0A225VR45	A0A225V5C1	Rab28 family GTPase.	Rab proteins geranylgeranyltransferase component A.	0.806
PHMEG_00020106	PHMEG_00035294	A0A225VR45	A0A225UPH3	Rab28 family GTPase.	Uncharacterized protein.	0.592
PHMEG_00020106	PHMEG_00038752	A0A225VR45	A0A225UGY9	Rab28 family GTPase.	Uncharacterized protein.	0.592
PHMEG_00020106	PHMEG_0005948	A0A225VR45	A0A225WQ61	Rab28 family GTPase.	Rab5 family GTPase.	0.642
PHMEG_00020106	PHMEG_0005959	A0A225VR45	A0A225WQA2	Rab28 family GTPase.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.727
PHMEG_00020106	PHMEG_0007065	A0A225VR45	A0A225WMF4	Rab28 family GTPase.	Geranylgeranyl transferase type-2 subunit alpha.	0.592
PHMEG_00021443	PHMEG_0001637	A0A225VMH9	A0A225X2N3	Ras family GTPase.	Rab5 family GTPase.	0.682
PHMEG_00021443	PHMEG_00028251	A0A225VMH9	A0A225V5C1	Ras family GTPase.	Rab proteins geranylgeranyltransferase component A.	0.806
PHMEG_00021443	PHMEG_00035294	A0A225VMH9	A0A225UPH3	Ras family GTPase.	Uncharacterized protein.	0.592
PHMEG_00021443	PHMEG_00038752	A0A225VMH9	A0A225UGY9	Ras family GTPase.	Uncharacterized protein.	0.592