STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHMEG_00022251Uncharacterized protein. (288 aa)    
Predicted Functional Partners:
PHMEG_00020577
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.782
PHMEG_00012794
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.669
PHMEG_0007285
Nuclear pore protein.
    
 0.666
PHMEG_00018986
Nuclear pore complex protein Nup155.
   
 0.656
PHMEG_00015551
Uncharacterized protein.
    
 0.648
PHMEG_00012370
RRM domain-containing protein.
    
  0.629
PHMEG_00037064
Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.
    
 0.597
PHMEG_000226
Vesicle coat complex COPII subunit protein; Belongs to the WD repeat SEC13 family.
    
 0.597
PHMEG_00021981
Nucleoporin; Belongs to the WD repeat SEC13 family.
    
 0.592
PHMEG_00021166
Nucleoporin.
    
 0.592
Your Current Organism:
Phytophthora megakarya
NCBI taxonomy Id: 4795
Other names: ATCC 42100, CBS 238.83, IMI 202077, P. megakarya
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