STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHMEG_00022116Avirulence (Avh) protein. (455 aa)    
Predicted Functional Partners:
PHMEG_0002948
Tryptophan synthase, beta subunit.
    
  0.737
PHMEG_00027314
Malate synthase; Belongs to the malate synthase family.
  
 
 0.701
PHMEG_0006520
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
    
 0.616
PHMEG_00022206
Malate dehydrogenase.
  
 0.519
PHMEG_0004005
Malate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
 0.519
PHMEG_0001557
Aspartate aminotransferase.
  
 0.483
PHMEG_0003390
Serine-pyruvate aminotransferase.
  
 
 0.481
PHMEG_000216
Acetolactate synthase, small subunit.
    
  0.480
PHMEG_0004262
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
   
 
 0.463
PHMEG_00016752
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
  
 
 0.461
Your Current Organism:
Phytophthora megakarya
NCBI taxonomy Id: 4795
Other names: ATCC 42100, CBS 238.83, IMI 202077, P. megakarya
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