STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHMEG_00022541Ubiquitin conjugation factor E4. (1061 aa)    
Predicted Functional Partners:
PHMEG_00015848
HECT E3 ubiquitin ligase.
   
 0.872
PHMEG_0007666
HECT E3 ubiquitin ligase.
   
 0.872
PHMEG_00034738
NPL4-like protein.
    
 
 0.870
PHMEG_00023376
Ubiquitin thioesterase OTU1.
    
 
 0.870
PHMEG_0002408
UV excision repair protein RAD23.
    
 0.859
PHMEG_00010271
UBX domain-containing protein.
    
 
 0.809
PHMEG_00032376
PDZ domain-containing protein.
    
 0.802
PHMEG_000904
Ubiquitin family protein.
    
 0.802
PHMEG_00034607
Ubiquitin fusion degradation protein.
    
 
 0.774
PHMEG_00033247
Ubiquitin fusion degradation protein.
    
 
 0.774
Your Current Organism:
Phytophthora megakarya
NCBI taxonomy Id: 4795
Other names: ATCC 42100, CBS 238.83, IMI 202077, P. megakarya
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.