STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHMEG_00012121Uncharacterized protein. (170 aa)    
Predicted Functional Partners:
PHMEG_00032659
Uncharacterized protein.
   
 0.426
PHMEG_00030148
Ribosomal protein L16.
   
 0.426
PHMEG_0007144
Uncharacterized protein.
   
 0.426
PHMEG_0007143
Uncharacterized protein.
   
 0.426
PHMEG_0001213
60S ribosomal protein L10.
   
 0.426
PHMEG_00019654
Mitochondrial 39-S ribosomal protein L47.
    
   0.412
PHMEG_00020129
Ribosomal protein L23.
    
   0.412
PHMEG_00015801
Putative mitochondrial protein.
    
   0.412
PHMEG_00012240
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
   0.412
PHMEG_0008792
Rab-GAP TBC domain-containing protein.
    
   0.412
Your Current Organism:
Phytophthora megakarya
NCBI taxonomy Id: 4795
Other names: ATCC 42100, CBS 238.83, IMI 202077, P. megakarya
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