STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHMEG_0003366Alanyl-tRNA synthetase. (453 aa)    
Predicted Functional Partners:
PHMEG_00038027
Alanine-tRNA ligase.
     
 0.657
PHMEG_00011371
Alanine-tRNA ligase.
     
 0.657
PHMEG_0005520
Alanine-tRNA ligase.
     
 0.657
PHMEG_00033813
Anaphase-promoting complex subunit.
     
 0.641
PHMEG_00032956
Prostaglandin E synthase.
     
 0.568
PHMEG_00040581
26S protease regulatory protein; Belongs to the AAA ATPase family.
   
    0.456
PHMEG_00022853
tRNA-binding domain-containing protein.
      
 0.403
Your Current Organism:
Phytophthora megakarya
NCBI taxonomy Id: 4795
Other names: ATCC 42100, CBS 238.83, IMI 202077, P. megakarya
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.