STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHMEG_0002714Farnesyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. (345 aa)    
Predicted Functional Partners:
PHMEG_00019220
Diphosphomevalonate decarboxylase.
  
 0.978
PHMEG_000352
Protein farnesyltransferase/geranylgeranyltransferase.
     
 0.932
PHMEG_0002948
Tryptophan synthase, beta subunit.
    
 0.905
PHMEG_00018977
NAD(P)-bd_dom domain-containing protein.
    
 0.902
PHMEG_00016089
Uncharacterized protein.
    
 0.902
PHMEG_0006957
NADH dehydrogenase.
  
 0.875
PHMEG_00039202
Tryptophan biosynthesis protein.
    
  0.853
PHMEG_00015134
N-5'phosphoribosyl anthranilate isomerase/indole-3-glycerol phosphate synthase.
    
  0.853
PHMEG_00013784
Tryptophan biosynthesis protein.
    
  0.853
PHMEG_00032567
Alkyl transferase; Belongs to the UPP synthase family.
  
 
 0.806
Your Current Organism:
Phytophthora megakarya
NCBI taxonomy Id: 4795
Other names: ATCC 42100, CBS 238.83, IMI 202077, P. megakarya
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