STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHMEG_000209Glutamine cyclotransferase. (284 aa)    
Predicted Functional Partners:
PHMEG_0009330
CCR4-NOT transcription complex subunit.
    
 0.932
PHMEG_0005184
CCR4-NOT transcription complex subunit.
    
 0.932
PHMEG_0005094
NOT2_3_5 domain-containing protein.
    
 0.879
PHMEG_0003605
Cell differentiation protein rcd1.
    
 0.870
PHMEG_0002241
Subunit of the CCR4NOT complex.
    
 0.860
PHMEG_0003127
CCR4NOT transcription complex subunit 7.
    
 0.849
PHMEG_00026985
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]
    
 0.815
PHMEG_00040425
Uncharacterized protein.
    
 0.720
PHMEG_00038262
Endo/exonuclease/phosphatase domain-containing protein.
    
 0.720
PHMEG_00026196
Endo/exonuclease/phosphatase domain-containing protein.
    
 0.720
Your Current Organism:
Phytophthora megakarya
NCBI taxonomy Id: 4795
Other names: ATCC 42100, CBS 238.83, IMI 202077, P. megakarya
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