Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CPX_001663dsRNA binding, YrdC domain protein; Belongs to the SUA5 family. (184 aa)    
Predicted Functional Partners:
gcp
O-sialoglycoprotein endopeptidase-like protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
 0.953
yjeE
P-loop hydrolase.
    
 0.933
CPX_001569
Glycoprotease family protein.
    
 0.933
prfA
Protein chain release factor A.
       0.820
rplI-2
Exopolyphosphatase-related protein; Binds to the 23S rRNA.
  
    0.706
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
    0.645
polA
DNA polymerase I.
  
  
 0.518
pgk
3-phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
  0.500
ksgA-2
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
    0.498
rpoZ
DNA-Directed RNA Polymerase Subunit K/Omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
    0.476
Your Current Organism:
Phytoplasma pruni
NCBI taxonomy Id: 479893
Other names: C. Phytoplasma pruni, Candidatus Phytoplasma pruni
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