STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI98386.1Putative lyase. (136 aa)    
Predicted Functional Partners:
AKJ01390.1
Hypothetical protein.
 
  
 0.774
AKI98387.1
Beta-hexosaminidase.
       0.523
AKJ01498.1
Glycine-rich cell wall structural protein.
  
    0.516
AKJ00349.1
Hypothetical protein.
  
     0.485
AKJ07994.1
Trehalose synthase.
  
     0.469
AKJ06239.1
Trehalose synthase.
  
     0.466
AKJ01018.1
Peptidase, M19 family.
  
     0.464
AKJ07747.1
Glutathione-dependent formaldehyde-activating, GFA.
 
    0.463
AKJ00837.1
Peptidase, M19 family.
  
     0.454
AKJ04468.1
Transcriptional regulator, LuxR family.
   
    0.446
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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