STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI98412.1ABC-type multidrug transport system, ATPase component. (308 aa)    
Predicted Functional Partners:
AKI98413.1
Transcriptional regulator, GntR family.
 
  
 0.850
AKI98411.1
Hypothetical protein.
       0.773
AKJ04123.1
ABC transporter ATP-binding protein.
  
     0.763
AKI98409.1
Membrane protein.
  
 
 0.732
rpsK
SSU ribosomal protein S11p; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.604
AKI98410.1
ABC transporter ATP-binding protein.
 
    
0.575
AKJ05170.1
ABC transporter, ATP-binding protein.
  
     0.532
rpsE
SSU ribosomal protein S5p; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
     0.530
AKJ02447.1
ABC transporter, ATP-binding protein.
  
     0.528
AKJ05168.1
ABC transporter, ATP-binding protein.
  
     0.521
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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