Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI98418.1Hypothetical protein. (158 aa)    
Predicted Functional Partners:
AKI98840.1
Hypothetical protein.
 
  
 0.790
AKI99826.1
Hypothetical protein.
 
  
 0.790
AKJ01560.1
Hypothetical protein.
 
  
 0.790
AKJ06816.1
Secreted protein Hcp.
 
   
 0.749
AKJ00072.1
Hypothetical protein.
 
     0.733
AKJ06469.1
Hypothetical protein.
 
   
 0.733
AKJ06468.1
Hypothetical protein.
 
   
 0.707
AKJ06809.1
Hypothetical protein.
 
     0.705
AKJ06810.1
Putative transmembrane protein.
 
    0.696
AKI98698.1
Hypothetical protein.
 
   
 0.692
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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