Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI98445.1Hypothetical protein. (185 aa)    
Predicted Functional Partners:
AKI98446.1
Serine/threonine kinase PKN8.
 
 
   0.821
AKI98444.1
Hypothetical protein.
 
    0.645
AKI99205.1
Hypothetical protein.
  
     0.561
AKJ07985.1
Glutamate synthase [NADPH] large chain.
  
     0.487
AKJ05171.1
Efflux transporter, RND family, MFP subunit.
  
     0.471
AKJ05183.1
Hypothetical protein.
  
  
 0.468
AKJ07005.1
Hypothetical protein.
  
     0.462
AKJ03282.1
Permease.
  
     0.453
AKJ02448.1
Hypothetical protein.
  
     0.452
AKJ04755.1
Permease.
  
     0.448
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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