Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI98473.1Inner membrane protein YqiK. (257 aa)    
Predicted Functional Partners:
AKJ03442.1
Rossmann fold nucleotide-binding protein Smf.
 
  
 0.904
AKJ03444.1
Hypothetical protein.
 
     0.788
AKJ04204.1
Putative activity regulator of membrane protease YbbK.
  
  
 0.723
AKJ07433.1
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase.
 
  0.695
AKI98472.1
Hypothetical protein.
       0.682
AKJ06548.1
PspA/IM30 family protein.
  
  
 0.623
AKI98474.1
Hypothetical protein.
       0.544
AKJ04059.1
Hypothetical protein.
 
     0.531
AKJ04061.1
Mg-chelatase subunit ChlD.
  
     0.515
AKJ04060.1
Hypothetical protein.
  
     0.511
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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