Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI98497.1Hypothetical protein. (375 aa)    
Predicted Functional Partners:
AKI98498.1
Hypothetical protein.
       0.773
AKI99032.1
ABC transport protein, ATP-binding subunit.
  
     0.773
AKI99371.1
Hypothetical protein.
  
     0.771
AKI98578.1
Hypothetical protein.
 
     0.693
AKJ07009.1
Putative RecF protein.
  
     0.653
AKJ01494.1
Putative RecF protein.
  
     0.648
AKJ03564.1
Putative secreted protein.
  
     0.638
AKJ07977.1
Hypothetical protein.
  
     0.566
AKI98496.1
Transketolase; Belongs to the transketolase family.
       0.513
AKJ01921.1
Hypothetical protein.
  
     0.493
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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