Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKI98503.1Hypothetical protein. (336 aa)    
Predicted Functional Partners:
AKI98502.1
High-affnity carbon uptake protein Hat/HatR.
   
  0.844
AKJ05086.1
Malonyl CoA-acyl carrier protein transacylase.
   
 0.713
AKJ07375.1
Chaperone protein DnaK.
  
 0.604
AKJ01428.1
Long-chain-fatty-acid CoA ligase.
  
 0.590
AKJ07976.1
Hypothetical protein.
    
 0.558
AKJ07821.1
Hypothetical protein.
    
 0.548
AKI98504.1
Trichohyalin.
       0.531
AKJ02913.1
Protein serine/threonine phosphatase PrpC, regulation of stationary phase.
  
 0.527
AKJ07199.1
HtrA protease/chaperone protein.
  
 0.520
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 0.512
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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