Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI98524.1Aspartate aminotransferase. (373 aa)    
Predicted Functional Partners:
AKI98526.1
Hypothetical protein.
       0.773
AKJ07694.1
Transferase.
      
 0.623
AKI98525.1
Hypothetical protein.
       0.572
AKJ06335.1
Peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase.
  
  
 0.567
AKJ05005.1
Aspartokinase.
  
 
 0.473
AKI98522.1
Response regulator.
       0.470
AKI98523.1
Circadian clock protein KaiC.
       0.470
AKJ07258.1
Glutamate synthase [NADPH] large chain.
     
 0.465
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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