Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI98549.1Hypothetical protein; Belongs to the UPF0312 family. (195 aa)    
Predicted Functional Partners:
AKI98548.1
Iron-sulfur cluster-binding protein, Rieske family.
 
     0.923
AKJ00685.1
Hypothetical protein.
  
     0.686
AKJ02600.1
Cell division protein FtsK.
 
     0.635
AKI98550.1
Hypothetical protein.
       0.625
AKI99813.1
Hypothetical protein.
 
     0.618
AKJ05697.1
Hypothetical protein.
  
     0.595
AKI99203.1
Putative asmA protein precursor.
  
     0.582
AKJ02163.1
Response regulator/GGDEF/GAF domain protein.
  
     0.571
AKJ05851.1
Inner spore coat protein H.
  
     0.532
AKJ06991.1
Transglutaminase-like superfamily domain protein.
  
     0.531
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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