STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI98576.1Eukaryotic DNA ligase III like protein. (230 aa)    
Predicted Functional Partners:
AKI98577.1
Hypothetical protein.
       0.801
AKI98578.1
Hypothetical protein.
 
     0.760
AKJ05181.1
DNA ligase.
  
   
 0.643
AKI98575.1
Hypothetical protein.
       0.532
AKJ01308.1
High-affnity carbon uptake protein Hat/HatR.
  
     0.507
AKI98579.1
Hypothetical protein.
       0.502
AKI98573.1
Hypothetical protein.
 
     0.461
AKJ00059.1
DNA polymerase II.
  
    0.453
AKJ07002.1
Hypothetical protein.
 
     0.443
AKJ04541.1
High-affnity carbon uptake protein Hat/HatR.
  
     0.440
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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