Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKI98604.1Phytoene dehydrogenase. (474 aa)    
Predicted Functional Partners:
AKJ00469.1
Hypothetical protein.
  
     0.673
AKI99455.1
ATP-dependent DNA ligase.
 
     0.664
AKI98662.1
Hypothetical protein.
  
     0.584
AKJ02206.1
Hypothetical protein.
  
     0.570
AKI98907.1
Phytoene synthase.
  
  
 0.525
AKJ00241.1
Phytoene synthase.
  
  
 0.525
AKJ00951.1
Ser/Thr and Tyr protein phosphatase.
  
  
 0.504
AKI98603.1
Putative short-chain oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.488
AKJ07989.1
Hypothetical protein.
  
     0.429
AKJ00134.1
Hypothetical protein.
  
     0.416
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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