Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKI98618.1Formate dehydrogenase O putative subunit. (401 aa)    
Predicted Functional Partners:
AKI98617.1
Formate dehydrogenase O beta subunit.
 
  
 0.964
AKI98616.1
Formate dehydrogenase O alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.953
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
   
 0.700
AKI98892.1
Cytochrome c552 precursor; Belongs to the cytochrome c-552 family.
  
  
 0.694
selD
Selenide,water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.565
AKI98615.1
Peptidase, M23/M37 family.
       0.492
AKJ05642.1
Fe-S-cluster-containing hydrogenase components 1.
 
  
 0.488
AKJ00634.1
Selenocysteine-specific translation elongation factor.
 
   
 0.485
AKJ07788.1
Membrane-anchored protein.
  
     0.479
AKI98766.1
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.478
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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