Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI98633.1Hypothetical protein. (265 aa)    
Predicted Functional Partners:
AKI99703.1
4-oxalocrotonate decarboxylase.
  
  
 0.640
AKJ03915.1
Dienelactone hydrolase family.
     0.626
AKJ04290.1
Pirin protein; Belongs to the pirin family.
 
  
 0.599
AKJ01048.1
Pirin protein; Belongs to the pirin family.
 
  
 0.592
AKJ05344.1
Pirin-like protein YhhW; Belongs to the pirin family.
 
  
 0.550
AKJ06831.1
Pirin protein; Belongs to the pirin family.
 
  
 0.515
AKJ05691.1
Pirin-related protein; Belongs to the pirin family.
 
  
 0.514
AKJ07186.1
Pirin protein; Belongs to the pirin family.
 
  
 0.456
metG
Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
      0.436
mobA
Formate dehydrogenase chain D; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.
       0.427
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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