Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI98662.1Hypothetical protein. (141 aa)    
Predicted Functional Partners:
AKI98663.1
Threonine dehydrogenase.
 
     0.899
AKI98711.1
Spore photoproduct lyase.
  
     0.713
AKJ06122.1
Hypothetical protein.
  
     0.675
AKJ03341.1
Hypothetical protein.
  
     0.669
AKJ03346.1
dTDP-4-dehydrorhamnose reductase; Belongs to the glycosyl hydrolase 1 family.
  
     0.665
AKI98604.1
Phytoene dehydrogenase.
  
     0.584
AKI98664.1
Hypothetical protein.
       0.580
AKJ05669.1
Threonine dehydrogenase.
 
     0.578
AKJ00469.1
Hypothetical protein.
  
     0.573
AKJ02082.1
Chemotaxis protein methyltransferase CheR.
 
 
 0.572
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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