STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI98672.1Branched-chain amino acid aminotransferase. (355 aa)    
Predicted Functional Partners:
AKJ05005.1
Aspartokinase.
  
 
 0.935
AKJ02752.1
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit.
  
 0.926
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
    
 0.924
AKJ02753.1
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit.
  
 
 0.917
AKJ04423.1
Homoserine dehydrogenase.
 
 
 0.916
AKJ01627.1
O-acetylhomoserine sulfhydrylase.
   
 0.914
AKJ05003.1
Cystathionine gamma-synthase.
   
 0.914
AKJ06319.1
Cystathionine gamma-lyase.
   
 0.914
AKJ00160.1
Aspartate aminotransferase.
  
 
 0.910
AKJ00897.1
Aspartate aminotransferase.
  
 
 0.910
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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