Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI98701.1Hypothetical protein. (424 aa)    
Predicted Functional Partners:
AKJ06814.1
Hypothetical protein.
 
  
 0.623
AKJ04098.1
Hypothetical protein.
 
  
 0.594
AKJ06815.1
Hypothetical protein.
 
  
 0.591
AKI98700.1
Hypothetical protein.
       0.571
AKJ06809.1
Hypothetical protein.
 
  
 0.551
AKJ04097.1
Hypothetical protein.
 
  
 0.545
AKJ06818.1
Protein ImpG/VasA.
 
  
 0.531
AKJ06751.1
Hypothetical protein.
  
     0.515
AKJ06810.1
Putative transmembrane protein.
 
  
 0.515
AKI98702.1
Hypothetical protein.
       0.486
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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