Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI98750.1Trypsin domain protein. (871 aa)    
Predicted Functional Partners:
AKJ06853.1
Glycosyl hydrolase, BNR repeat precursor.
  
     0.772
AKJ08209.1
BNR/Asp-box repeat domain protein.
  
     0.740
AKI99008.1
Hypothetical protein.
  
     0.658
AKI98751.1
Hypothetical protein.
       0.572
AKI99009.1
Outer membrane vitamin B12 receptor BtuB.
  
     0.545
AKJ05419.1
Hypothetical protein.
  
     0.534
AKJ04743.1
Hypothetical protein.
  
     0.507
AKJ06146.1
Hypothetical protein.
  
     0.432
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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