Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI98840.1Hypothetical protein. (345 aa)    
Predicted Functional Partners:
AKI98839.1
Hypothetical protein.
  
  
 0.825
AKJ00072.1
Hypothetical protein.
 
  
 0.803
AKI98418.1
Hypothetical protein.
 
  
 0.790
AKI99825.1
Hypothetical protein.
 
  
 0.790
AKJ01561.1
Glycerate kinase.
 
  
 0.790
AKJ06816.1
Secreted protein Hcp.
 
  
 0.788
AKJ06469.1
Hypothetical protein.
 
  
 0.777
AKJ06468.1
Hypothetical protein.
 
  
 0.771
AKJ06819.1
Hypothetical protein.
 
    0.771
AKJ06815.1
Hypothetical protein.
 
    0.769
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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