Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI98873.1Hypothetical protein. (50 aa)    
Predicted Functional Partners:
AKJ07944.1
Hypothetical protein.
  
     0.701
AKI98872.1
Alkaline phosphatase precursor.
       0.697
AKJ07948.1
Putative lipoprotein.
  
     0.547
AKI98871.1
Hypothetical protein.
       0.483
AKJ02076.1
Putative immunogloblin.
  
     0.477
AKJ01921.1
Hypothetical protein.
  
     0.468
AKI99678.1
Putative diheme cytochrome c-553.
  
     0.454
AKJ06148.1
Putative lipoprotein.
  
     0.447
AKI98874.1
Hypothetical protein.
       0.444
AKJ03564.1
Putative secreted protein.
  
     0.401
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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