STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI98887.1tRNA (adenine37-N(6))-methyltransferase TrmN6. (253 aa)    
Predicted Functional Partners:
AKI98888.1
Nitroreductase family protein.
       0.777
AKI98890.1
Hypothetical protein.
       0.671
rsmI
rRNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
  
 0.627
AKI99798.1
Putative endonuclease containing a URI domain protein.
  
  
 0.523
AKI98889.1
Hypothetical protein.
       0.502
AKI98891.1
Cytochrome c nitrite reductase, small subunit NrfH.
       0.502
rnr
3'-to-5' exoribonuclease RNase R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
 
     0.477
AKJ04584.1
3'-to-5' exoribonuclease RNase R; Belongs to the RNR ribonuclease family.
 
     0.461
birA
Biotin-protein ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
     0.425
AKI98892.1
Cytochrome c552 precursor; Belongs to the cytochrome c-552 family.
       0.400
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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